摘要: |
为研究NIP5-1基因(Nodulin26-like intrinsic protein)在百合生长发育方面的作用机理,利用RACE技术克隆得到百合NIP5-1基因的全长cDNA序列。运用多个软件进行生物信息学分析;采用实时荧光定量PCR(qRT-PCR)及RT-PCR技术检测其表达特性。结果表明:1)百合NIP5-1基因全长为1 492 bp,包含1个900 bp的完整开放阅读框(Open reading frame,ORF),共编码299个氨基酸;2)百合NIP5-1蛋白属于跨膜通道蛋白MIP超家族。具有6个跨膜区;在B、E环分别具有NIP5-1蛋白特有的NPS、NPV模体,具有该蛋白Ar/R filter分子筛特有的AIGR模体;与小果野芭蕉、香瓜、葡萄、黄瓜、番茄的相似性分别为86%、83%、84%、83%和82%;3)荧光定量结果显示,百合NIP5-1基因在茎中表达量最高,在花瓣中表达量较低,在叶、鳞茎、根中表达量均极低。RT-PCR半定量检测显示,其在“湿”柱头上表达量显著高于“干”柱头,这与转录组测序结果相符合。上述研究暗示,百合NIP5-1可能是硼酸通道蛋白,在促进茎生长及生殖活动中发挥作用。 |
关键词: 百合 NIP5-1基因克隆 序列分析 表达分析 |
DOI:10.11841/j.issn.1007-4333.2017.03.04 |
投稿时间:2016-08-24 |
基金项目:北京市科技提升计划(TJSHG201310020020);北京林果业生态环境功能提升协同创新中心(PXM2016-014207-000038);北京市属高等学校创新团队建设项目(IDHT20150503);城乡生态环境北京实验室项目(PXM2016-014207-000003) |
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Cloning and expression analysis of aquaporins LotNIP5-1 gene from lily |
XUE Xiaoxia, SHAO Yang, ZHANG Kezhong, CUI Jinteng
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(College of Landscape Architecture, Beijing University of Agriculture, Beijing 102206, China) |
Abstract: |
To study the mechanism of NIP5-1 gene(nodulin26-like intrinsic protein)involved in the growth and development of lily,the full-length cDNA of LotNIP5-1 gene was cloned via RACE technology.Bioinformatics analysis was performed by using multiple softwares,and the expression of LotNIP5-1 was detected via real-time quantitative PCR (qRT-PCR) and RT-PCR.The results showed that:1) LotNIP5-1 gene cDNA was 1 492 bp in length containing an open reading frame of 900 bp,which encoded 299 amino acid;2) LotNIP5-1 protein belonged to transmembrane channel protein MIP super family,which had six transmembrane regions,one specific NPS motif in B loop and one NPV motif in E loop of NIP5-1,and a specific Ar/R filter's AIGR motif of NIP5-1 protein.The amino acid sequence of LotNIP5-1 was 86%,83%,84%,83%,82% identical to that of Musa acuminata,Cucumis melo,Vitis vinifera,C. sativus,Solanum lycopersicum,respectively.3) qRT-PCR results showed that the expression level of NIP5-1 was the highest in stems,lower in petals,and the lowest in leaves,bulbs and roots;RT-PCR analysis showed that the expression level of NIP5-1 in "wet" stigma was significantly higher than that in the "dry" stigma,which was consistent with the results of transcriptional sequencing.It was suggested that the LotNIP5-1 might be a boron acid channel protein,which functioned in the shoot growth and reproductive process of lily. |
Key words: Lilium NIP5-1 gene clone sequence analysis expression analysis |